Stem-loop dre-mir-430b-9

Accession

MI0002149

Description

Danio rerio dre-mir-430b-9 precursor miRNA miR-430

Gene
family

RF01413; miR-430

Literature search

40 open access papers mention dre-mir-430b-9
(216 sentences)

Sequence

33907036 reads, 64326.0 reads per million, 264 experiments

caguugaggucaACUCUAACUUUAGCAUCUUUCUUuuaagcauagUAGAAAGUGCUAUCAAGUUGGGGUAGauguuuacug
((((.((.(((.(((((((((((((((.((((((.(((....))).)))))))))))..)))))))))).))).)).))))

Structure

    u  g   a          --     U      U   a 
cagu ga guc ACUCUAACUU  UAGCA CUUUCU uua g
|||| || ||| ||||||||||  ||||| |||||| |||  
guca uu uaG UGGGGUUGAA  AUCGU GAAAGA gau c
    u  g   A          CU     -      U   a 

Annotation confidence High

Genome context

chr4: 28698305-28698385 [+]

Clustered miRNAs

51 other miRNAs are < 10 kb from dre-mir-430b-9

Mature dre-miR-430b-5p

• Accession: MIMAT0031928
• Description: Danio rerio dre-miR-430b-5p mature miRNA
• Sequence: 13 - ACUCUAACUUUAGCAUCUUUCUU - 35
• Evidence: not_experimental

Mature dre-miR-430b-3p

• Accession: MIMAT0001424
• Description: Danio rerio dre-miR-430b-3p mature miRNA
• Sequence: 46 - UAGAAAGUGCUAUCAAGUUGGGGUAG - 71
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15774722
   MicroRNAs regulate brain morphogenesis in zebrafish
   "Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF"
   "Science (2005) 308:833-838