Stem-loop dre-mir-365-3

Accession

MI0002070

Description

Danio rerio dre-mir-365-3 precursor miRNA

Literature search

2 open access papers mention dre-mir-365-3
(3 sentences)

Sequence

88775 reads, 183.0 reads per million, 271 experiments

aagucagcaagaaaagugAGGGACUUUUAGGGGCAGCUGUGuuauacugacccagucaUAAUGCCCCUAAAAAUCCUUAuugcucuugcagugcucaac
.((((.((((((..((((((((..(((((((((((((((.((((...)))).)))).....))))))))))).))))))))..)))))).).)))....

Structure

---a   - a      aa        AC           -----    U    u 
    agu c gcaaga  agugAGGG  UUUUAGGGGCA     GCUG Guua  
    ||| | ||||||  ||||||||  |||||||||||     |||| |||| a
    ucg g cguucu  uuAUUCCU  AAAAUCCCCGU     ugac cagu  
caac   u a      cg        -A           AAUac    c    c 

Annotation confidence High

Genome context

chr6: 18516311-18516409 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-365-3

Mature dre-miR-365-5p

• Accession: MIMAT0060899
• Description: Danio rerio dre-miR-365-5p mature miRNA
• Sequence: 19 - AGGGACUUUUAGGGGCAGCUGUG - 41
• Evidence: experimental ; unknown

Mature dre-miR-365-1-3p

• Accession: MIMAT0001875
• Description: Danio rerio dre-miR-365-1-3p mature miRNA
• Sequence: 59 - UAAUGCCCCUAAAAAUCCUUA - 79
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293