Stem-loop dre-mir-1788

Accession

MI0010838

Description

Danio rerio dre-mir-1788 precursor miRNA

Literature search

1 open access papers mention dre-mir-1788
(1 sentences)

Sequence

74 reads, 8 reads per million, 8 experiments

ucaaccacugucuuguauccgaGGCUUGUUUUAAGUUGCCUGCGaucucuuaaugacuCAGGCAGCUAAAGCAAGUCUGggaggccagagacaacacgaca
........((((((((.(((.((((((((((((.((((((((.(.((.......))).)))))))))))))))))))).))).))..))))))........

Structure

ucaaccac      --  a   g            A        C a  uc 
        ugucuu  gu ucc aGGCUUGUUUUA GUUGCCUG G uc  u
        ||||||  || ||| |||||||||||| |||||||| | ||  u
        acagag  cg agg UCUGAACGAAAU CGACGGAC c ag  a
acagcaca      ac  g   G            -        u -  ua 

Annotation confidence Not enough data

Genome context

chr9: 11551604-11551704 [-]

Mature dre-miR-1788-5p

• Accession: MIMAT0011294
• Description: Danio rerio dre-miR-1788-5p mature miRNA
• Sequence: 23 - GGCUUGUUUUAAGUUGCCUGCG - 44
• Evidence: experimental ; 454 [1]

Mature dre-miR-1788-3p

• Accession: MIMAT0011295
• Description: Danio rerio dre-miR-1788-3p mature miRNA
• Sequence: 59 - CAGGCAGCUAAAGCAAGUCUG - 79
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195