Stem-loop dre-mir-222b

Accession

MI0010845

Description

Danio rerio dre-mir-222b precursor miRNA mir-221

Gene
family

RF00651; mir-221

Literature search

7 open access papers mention dre-mir-222b
(59 sentences)

Sequence

112870 reads, 269.0 reads per million, 243 experiments

gacgugaucugcagACUCAGUACUCGGUGUAGAGUCUgugugauucagaagagcAGCUACAUCUGAAUACUGGGUCAguggagacgucacacgcuac
(((((..(((((.(((((((((.(((((((((..(((.((.....))..)))....))))).)))).))))))))).))))).))))).........

Structure

---------     ga     a         C    -     --AG   -g  u 
         gacgu  ucugc gACUCAGUA UCGG UGUAG    UCU  ug g
         |||||  ||||| ||||||||| |||| |||||    |||  || a
         cugca  aggug CUGGGUCAU AGUC ACAUC    aga  ac u
caucgcaca     -g     A         A    U     GAcg   ag  u 

Annotation confidence High

Genome context

chr21: 44568170-44568266 [-]

Mature dre-miR-222b-5p

• Accession: MIMAT0060907
• Description: Danio rerio dre-miR-222b-5p mature miRNA
• Sequence: 15 - ACUCAGUACUCGGUGUAGAGUCU - 37
• Evidence: experimental ; 454 [1]

Mature dre-miR-222b-3p

• Accession: MIMAT0011303
• Description: Danio rerio dre-miR-222b-3p mature miRNA
• Sequence: 55 - AGCUACAUCUGAAUACUGGGUCA - 77
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195