Stem-loop dre-mir-430c-2

Accession

MI0002079

Description

Danio rerio dre-mir-430c-2 precursor miRNA miR-430

Gene
family

RF01413; miR-430

Literature search

38 open access papers mention dre-mir-430c-2
(198 sentences)

Sequence

6889209 reads, 42088.0 reads per million, 232 experiments

auuaagaucACUUCAAACAGGAGCAUUGAUUUGuccuuuguucaUAAGUGCUUCUCUUUGGGGUAGUuuuaau
((((((((.((((((((.(((((((((...................))))))))).)))))))).))))))))

Structure

        c        C         GAUUUGuc 
auuaagau ACUUCAAA AGGAGCAUU        c
|||||||| |||||||| |||||||||        u
uaauuuUG UGGGGUUU UCUUCGUGA        u
        A        C         AUacuugu 

Annotation confidence High

Genome context

chr4: 28693975-28694047 [+]

Clustered miRNAs

38 other miRNAs are < 10 kb from dre-mir-430c-2

Mature dre-miR-430c-5p

• Accession: MIMAT0031929
• Description: Danio rerio dre-miR-430c-5p mature miRNA
• Sequence: 10 - ACUUCAAACAGGAGCAUUGAUUUG - 33
• Evidence: not_experimental

Mature dre-miR-430c-3p

• Accession: MIMAT0001425
• Description: Danio rerio dre-miR-430c-3p mature miRNA
• Sequence: 45 - UAAGUGCUUCUCUUUGGGGUAGU - 67
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15774722
   MicroRNAs regulate brain morphogenesis in zebrafish
   "Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF"
   "Science (2005) 308:833-838