Stem-loop dre-let-7h

Accession

MI0001875

Description

Danio rerio dre-let-7h precursor miRNA

Literature search

40 open access papers mention dre-let-7h
(194 sentences)

Sequence

976515 reads, 884.0 reads per million, 267 experiments

gaguuggcuguguuguggUGAGGUAGUAAGUUGUGUUGUUguuggggaucaguauaguauggcccuugaaggagauaaCUAUACAAUUUACUGCCUUCCauaaugcagacucuc
((((...(((((((((((.(((((((((((((((((.((((((((((.(((........))))))).......)))))).))))))))))))))))))))))))))))))))..

Structure

--    ugg           U                 U      -------    a   gua 
  gagu   cuguguugugg GAGGUAGUAAGUUGUGU GUUguu       gggg uca   u
  ||||   ||||||||||| ||||||||||||||||| ||||||       |||| |||    
  cuca   gacguaauaCC UUCCGUCAUUUAACAUA Caauag       uccc ggu   a
cu    ---           -                 U      aggaagu    -   aug 

Annotation confidence High

Genome context

chr23: 28536665-28536778 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-let-7h

Mature dre-let-7h-5p

• Accession: MIMAT0001766
• Description: Danio rerio dre-let-7h-5p mature miRNA
• Sequence: 19 - UGAGGUAGUAAGUUGUGUUGUU - 40
• Evidence: experimental ; cloned [1]

Mature dre-let-7h-3p

• Accession: MIMAT0052751
• Description: Danio rerio dre-let-7h-3p mature miRNA
• Sequence: 79 - CUAUACAAUUUACUGCCUUCC - 99
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293