Stem-loop dre-mir-1-2

Accession

MI0001877

Description

Danio rerio dre-mir-1-2 precursor miRNA

Literature search

42 open access papers mention dre-mir-1-2
(205 sentences)

Sequence

1177956 reads, 1606.0 reads per million, 256 experiments

gccuacuugguguACAUACUUCUUUAUGUGCCCAUaugaacauauaaaagcuaUGGAAUGUAAAGAAGUAUGUAUucuuggucaggu
(((((((.((.((((((((((((((((((..(((((...............))))).)))))))))))))))))).)).))).))))

Structure

    -   u  u                  GC     ugaaca 
gccu acu gg guACAUACUUCUUUAUGU  CCAUa      u
|||| ||| || ||||||||||||||||||  |||||      a
ugga ugg uc UAUGUAUGAAGAAAUGUA  GGUau      u
    c   u  u                  -A     cgaaaa 

Annotation confidence High

Genome context

chr2: 4116314-4116400 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-1-2

Mature dre-miR-1-2-5p

• Accession: MIMAT0052753
• Description: Danio rerio dre-miR-1-2-5p mature miRNA
• Sequence: 14 - ACAUACUUCUUUAUGUGCCCAU - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-1-3p

• Accession: MIMAT0001768
• Description: Danio rerio dre-miR-1-3p mature miRNA
• Sequence: 54 - UGGAAUGUAAAGAAGUAUGUAU - 75
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293