Stem-loop dre-mir-499

Accession

MI0004766

Description

Danio rerio dre-mir-499 precursor miRNA mir-499

Gene
family

RF00745; mir-499

Literature search

15 open access papers mention dre-mir-499
(154 sentences)

Sequence

3778 reads, 170 reads per million, 7 experiments

acugagagggaggcagUUAAGACUUGCAGUGAUGUUUAgagaaaugucacaugAACAUCACUUUAAGUCUGUGCUggcuccuguucugagu
(((.((((((((.((((..(((((((.(((((((((((..((....))...))))))))))).)))))))..)))).)))))..))).)))

Structure

   g   --     g    UA       C           -ga  a 
acu aga  gggag cagU  AGACUUG AGUGAUGUUUA   ga a
||| |||  ||||| ||||  ||||||| |||||||||||   ||  
uga ucu  uccuc gUCG  UCUGAAU UCACUACAAgu   cu u
   g   ug     g    UG       U           aca  g 

Annotation confidence Medium

Genome context

chr11: 25205153-25205243 [-]

Mature dre-miR-499-5p

• Accession: MIMAT0003749
• Description: Danio rerio dre-miR-499-5p mature miRNA
• Sequence: 17 - UUAAGACUUGCAGUGAUGUUUA - 38
• Evidence: experimental ; cloned [1], in-situ [1], Northern [1]

Mature dre-miR-499-3p

• Accession: MIMAT0032009
• Description: Danio rerio dre-miR-499-3p mature miRNA
• Sequence: 54 - AACAUCACUUUAAGUCUGUGCU - 75
• Evidence: not_experimental

References

1. PubMed ID: 16698962
   Cloning and expression of new microRNAs from zebrafish
   "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
   "Nucleic Acids Res (2006) 34:2558-2569