Stem-loop dre-mir-124-2

Accession

MI0001967

Description

Danio rerio dre-mir-124-2 precursor miRNA

Literature search

27 open access papers mention dre-mir-124-2
(84 sentences)

Sequence

57023601 reads, 4781.0 reads per million, 239 experiments

ccugcuuuucuuCGUGUUCACAGCGGACCUUGAuuuaaauguccauacaauUAAGGCACGCGGUGAAUGCCAagagagauggc
((...(((((((.((((((((.(((..((((((((.............))))))))..))).)))))))).)))))))..)).

Structure

-  ugc       C        A   GA        uaaau 
 cc   uuuucuu GUGUUCAC GCG  CCUUGAuu     g
 ||   ||||||| |||||||| |||  ||||||||     u
 gg   gagagaA CGUAAGUG CGC  GGAAUuaa     c
c  -ua       C        G   AC        cauac 

Annotation confidence High

Genome context

chr20: 38905531-38905613 [-]

Mature dre-miR-124-5p

• Accession: MIMAT0031960
• Description: Danio rerio dre-miR-124-5p mature miRNA
• Sequence: 13 - CGUGUUCACAGCGGACCUUGA - 33
• Evidence: not_experimental

Mature dre-miR-124-1-3p

• Accession: MIMAT0001819
• Description: Danio rerio dre-miR-124-1-3p mature miRNA
• Sequence: 52 - UAAGGCACGCGGUGAAUGCCA - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293