Stem-loop dre-mir-150

Accession

MI0002016

Description

Danio rerio dre-mir-150 precursor miRNA mir-150

Gene
family

RF00767; mir-150

Literature search

36 open access papers mention dre-mir-150
(159 sentences)

Sequence

640725 reads, 1027.0 reads per million, 294 experiments

caucuccgucUCUCCCAAUCCUUGUACCAGUGUcugauuuacagaugaCGCUGGACGGGGUUUGGGGGGGGcugaggga
..((((.(((((((((((.((((((.((((((((............)))))))))))))).))))))))))).))))..

Structure

ca    c           U      A        ugauu 
  ucuc gucUCUCCCAA CCUUGU CCAGUGUc     u
  |||| ||||||||||| |||||| ||||||||      
  ggag cGGGGGGGGUU GGGGCA GGUCGCag     a
ag    u           U      -        uagac 

Annotation confidence High

Genome context

chr3: 32571309-32571387 [+]

Mature dre-miR-150-5p

• Accession: MIMAT0001846
• Description: Danio rerio dre-miR-150-5p mature miRNA
• Sequence: 11 - UCUCCCAAUCCUUGUACCAGUGU - 33
• Evidence: experimental ; cloned [1]

Mature dre-miR-150-3p

• Accession: MIMAT0052767
• Description: Danio rerio dre-miR-150-3p mature miRNA
• Sequence: 49 - CGCUGGACGGGGUUUGGGGGGGG - 71
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293