Stem-loop dre-mir-221-1

Accession

MI0001387

Description

Danio rerio dre-mir-221-1 precursor miRNA mir-221

Gene
family

RF00651; mir-221

Literature search

78 open access papers mention dre-mir-221-1
(258 sentences)

Sequence

2803958 reads, 3528.0 reads per million, 284 experiments

gucgugaACCUGGCAUACAAUGUAGAUUUCUGUgugguacuaucuacAGCUACAUUGUCUGCUGGGUUUcaggccagcagaauaauucugcuc
(((..((((((((((.(((((((((....(((((.(((...))))))))))))))))).))))))))))..))).(((((((...))))))).

Structure

-------------------   gu          U         AUUU     u   a 
                   guc  gaACCUGGCA ACAAUGUAG    CUGUg ggu  
                   |||  |||||||||| |||||||||    ||||| ||| c
                   cgg  UUUGGGUCGU UGUUACAUC    GAcau cua  
cucgucuuaauaagacgac   ac          C         ----     -   u 

Annotation confidence High

Genome context

chr9: 33920932-33921024 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-221-1

Mature dre-miR-221-1-5p

• Accession: MIMAT0031926
• Description: Danio rerio dre-miR-221-1-5p mature miRNA
• Sequence: 8 - ACCUGGCAUACAAUGUAGAUUUCUGU - 33
• Evidence: not_experimental

Mature dre-miR-221-1-3p

• Accession: MIMAT0001288
• Description: Danio rerio dre-miR-221-1-3p mature miRNA
• Sequence: 48 - AGCUACAUUGUCUGCUGGGUUU - 69
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293