miRBase entry: dre-let-7b

Stem-loop dre-let-7b

Accession

MI0001865

Description

Danio rerio dre-let-7b precursor miRNA

Literature search

99 open access papers mention dre-let-7b
(332 sentences)

Sequence

4428662 reads, 5113.0 reads per million, 305 experiments

ucggacagggUGAGGUAGUAGGUUGUGUGGUUUcaggguuguguuuuugccccaucaggaguuaaCUAUACAACCUACUGCCUUCCcugaaggg
.....(((((.(((((((((((((((((((((((..(((.(.((....)).).)))..))...)))))))))))))))))))))))))).....

Structure

ucgga     U                     ---  ag   u u  u 
     caggg GAGGUAGUAGGUUGUGUGGUU   Uc  ggu g gu u
     ||||| |||||||||||||||||||||   ||  ||| | ||  
     gucCC UUCCGUCAUCCAACAUAUCaa   ag  cua c cg u
gggaa     -                     uug  ga   c c  u

Annotation confidence High

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Genome context

chr4: 18653148-18653241 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-let-7b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-let-7b-5p

Accession	MIMAT0001760
Description	Danio rerio dre-let-7b-5p mature miRNA
Sequence	11 - UGAGGUAGUAGGUUGUGUGGUUU - 33
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-let-7b-3p

Accession	MIMAT0060864
Description	Danio rerio dre-let-7b-3p mature miRNA
Sequence	66 - CUAUACAACCUACUGCCUUCC - 86
Evidence	experimental cloned [1]

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293