Stem-loop dre-mir-21-1

Accession

MI0001908

Description

Danio rerio dre-mir-21-1 precursor miRNA mir-21

Gene
family

RF00658; mir-21

Literature search

23 open access papers mention dre-mir-21-1
(191 sentences)

Sequence

116883089 reads, 102385.0 reads per million, 307 experiments

uuaugugucuuuauuggcguggauauaagucuuucccagugugucagAUAGCUUAUCAGACUGGUGUUGGCUguuacauucgcccggCGACAACAGUCUGUAGGCUGUCUgacauuuugggcauuuucuucuccgauuaaaaauauga
((((((......(((((.(.(((...((((....(((((.(((((((((((((((.(((((((.(((((.(((...........)))))))).)))))))))))))))))))))).))))).))))))).).))))).....))))))

Structure

      gucuuu     c u   uau    cuuu     u               U       G     G   uuac 
uuaugu      auugg g gga   aagu    cccag gugucagAUAGCUUA CAGACUG UGUUG CUg    a
||||||      ||||| | |||   ||||    ||||| ||||||||||||||| ||||||| ||||| |||    u
aguaua      uagcc c ucu   uuua    ggguu uacagUCUGUCGGAU GUCUGAC ACAGC ggc    u
      -aaaau     u u   ---    ---c     u               -       A     -   ccgc 

Annotation confidence High

Genome context

chr10: 28198894-28199041 [-]

Mature dre-miR-21-2-5p

• Accession: MIMAT0001787
• Description: Danio rerio dre-miR-21-2-5p mature miRNA
• Sequence: 48 - AUAGCUUAUCAGACUGGUGUUGGCU - 72
• Evidence: experimental ; cloned [1]

Mature dre-miR-21-1-3p

• Accession: MIMAT0060869
• Description: Danio rerio dre-miR-21-1-3p mature miRNA
• Sequence: 88 - CGACAACAGUCUGUAGGCUGUCU - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293