Stem-loop dre-mir-30e

Accession

MI0001950

Description

Danio rerio dre-mir-30e precursor miRNA

Literature search

10 open access papers mention dre-mir-30e
(139 sentences)

Sequence

9303204 reads, 8358.0 reads per million, 284 experiments

uacgggcuacUGUAAACAUCCUUGACUGGAAGCUggugcacaugauggagCUUUCAGUCGGAUGUUUGCAGCagccaacu
....((((.((((((((((((..(((((((((((....(....)....))))))))))))))))))))))).))))....

Structure

uacg    a            UU           ggug a 
    ggcu cUGUAAACAUCC  GACUGGAAGCU    c c
    |||| ||||||||||||  |||||||||||    |  
    ccga GACGUUUGUAGG  CUGACUUUCga    g a
ucaa    C            --           ggua u 

Annotation confidence High

Genome context

chr13: 27795130-27795209 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-30e

Mature dre-miR-30e-5p

• Accession: MIMAT0001807
• Description: Danio rerio dre-miR-30e-5p mature miRNA
• Sequence: 11 - UGUAAACAUCCUUGACUGGAAGCU - 34
• Evidence: experimental ; cloned [1]

Mature dre-miR-30e-1-3p

• Accession: MIMAT0003402
• Description: Danio rerio dre-miR-30e-1-3p mature miRNA
• Sequence: 51 - CUUUCAGUCGGAUGUUUGCAGC - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293