Stem-loop dre-let-7a-6

Accession

MI0001863

Description

Danio rerio dre-let-7a-6 precursor miRNA

Literature search

43 open access papers mention dre-let-7a-6
(316 sentences)

Sequence

41362042 reads, 40814.0 reads per million, 306 experiments

cacagugaaccuguguguuucuucaaggUGAGGUAGUAGGUUGUAUAGUUUgugggaaggaucacauccuauucaggugauaaCUAUACAGUCUAUUGCCUUCCcugagagacacaaugaccacgagug
(((.(((......((((((((((..(((.((((((((((((((((((((((.((((.(((((...))))).)))).)....))))))))))))))))))))).))))))))))))).....)))..)))

Structure

   -a   aaccug          ca   U                     ---- g    a     c 
cac  gug      uguguuucuu  agg GAGGUAGUAGGUUGUAUAGUU    U uggg aggau  
|||  |||      ||||||||||  ||| |||||||||||||||||||||    | |||| ||||| a
gug  cac      acacagagag  ucC UUCCGUUAUCUGACAUAUCaa    g acuu uccua  
   ag   -cagua          --   C                     uagu g    a     c 

Annotation confidence High

Genome context

chr6: 54506458-54506586 [-]

Mature dre-let-7a-5p

• Accession: MIMAT0001759
• Description: Danio rerio dre-let-7a-5p mature miRNA
• Sequence: 29 - UGAGGUAGUAGGUUGUAUAGUUU - 51
• Evidence: experimental ; cloned [1]

Mature dre-let-7a-6-3p

• Accession: MIMAT0060863
• Description: Danio rerio dre-let-7a-6-3p mature miRNA
• Sequence: 84 - CUAUACAGUCUAUUGCCUUCC - 104
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293