Stem-loop dre-mir-124-3

Accession

MI0001968

Description

Danio rerio dre-mir-124-3 precursor miRNA

Literature search

26 open access papers mention dre-mir-124-3
(83 sentences)

Sequence

57023829 reads, 4803.0 reads per million, 238 experiments

ggcucugugggauuucagacucuggcuuucCGUGUUCACAGCGGACCUUGAuuuaaugucuuacaauUAAGGCACGCGGUGAAUGCCAagagcggagccuuuuaacaucagcaggcc
(((.((((..(((...((.(((((.((((..((((((((.(((..(((((((((((....))).))))))))..))).))))))))..))))))))).))......))).)))))))

Structure

   u    gg   ---uuc  a     g    cC        A   GA        -   u 
ggc cugu  gau      ag cucug cuuu  GUGUUCAC GCG  CCUUGAuu uaa g
||| ||||  |||      || ||||| ||||  |||||||| |||  |||||||| |||  
ccg gacg  cua      uc gaggc gaga  CGUAAGUG CGC  GGAAUuaa auu u
   -    -a   caauuu  c     -    AC        G   AC        c   c 

Annotation confidence High

Genome context

chr24: 24455632-24455748 [+]

Mature dre-miR-124-5p

• Accession: MIMAT0031960
• Description: Danio rerio dre-miR-124-5p mature miRNA
• Sequence: 31 - CGUGUUCACAGCGGACCUUGA - 51
• Evidence: not_experimental

Mature dre-miR-124-1-3p

• Accession: MIMAT0001819
• Description: Danio rerio dre-miR-124-1-3p mature miRNA
• Sequence: 68 - UAAGGCACGCGGUGAAUGCCA - 88
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293