miRBase entry: dre-mir-2196

Stem-loop dre-mir-2196


Accession
MI0010846
Description
Danio rerio dre-mir-2196 precursor miRNA


Sequence

caggguaauugcuucgaauguuCCUCUCUGUGCUGCCAUUUGGGACcguuccgaagcgaaagggaggauaauguuccugggguuuuugaaacugaaacaaaaaguaauaa
(((..(((..(((((((((((((((((((.((((.....((((((...))))))))))..))))))))..))))))..)))))..)))...)))................

Structure
----------------   -gg   uu     --      --        -G    GCCAU      C 
                cag   uaa  gcuuc  gaaugu  uCCUCUCU  UGCU     UUGGGA  
                |||   |||  |||||  ||||||  ||||||||  ||||     |||||| c
                guc   guu  ugggg  cuugua  aggaggga  gcga     agccuu  
aauaaugaaaaacaaa   aaa   uu     uc      au        aa    -----      g 


Annotation confidence Not enough data
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Genome context
chr12: 31916943-31917052 [+]

Database links

Mature dre-miR-2196

Accession MIMAT0011304
Description Danio rerio dre-miR-2196 mature miRNA
Sequence 23 - CCUCUCUGUGCUGCCAUUUGGGAC - 46
Evidence experimental
454 [1]

References

  1. PubMed ID: 19397817
    Parallel DNA pyrosequencing unveils new zebrafish microRNAs
    Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
    BMC Genomics (2009) 10:195