Stem-loop dre-mir-196c

Accession

MI0010840

Description

Danio rerio dre-mir-196c precursor miRNA

Literature search

9 open access papers mention dre-mir-196c
(26 sentences)

Sequence

125237 reads, 126.0 reads per million, 208 experiments

cccguccagcugaugcgugguuUAGGUAGUUUGAUGUUGUUGGGguugacuuccuggcuCGACAACAAGAAACUGCCUUGAuuacgucaguuugccuucaucaaggccgu
.......(((((..((((((((.(((((((((..((((((((((.(.(.....).).))))))))))..))))))))).))))))))))))).(((((....)))))...

Structure

-----------cccgucc     au        U         GA          g u a 
                  agcug  gcgugguu AGGUAGUUU  UGUUGUUGGG u g c
                  |||||  |||||||| |||||||||  |||||||||| | | u
                  uugac  ugcauuAG UCCGUCAAA  ACAACAGCuc g c u
ugccggaacuacuuccgu     --        U         GA          g u c 

Annotation confidence High

Genome context

chr11: 2190621-2190730 [+]

Mature dre-miR-196c-5p

• Accession: MIMAT0011298
• Description: Danio rerio dre-miR-196c-5p mature miRNA
• Sequence: 23 - UAGGUAGUUUGAUGUUGUUGGG - 44
• Evidence: experimental ; 454 [1]

Mature dre-miR-196c-3p

• Accession: MIMAT0052799
• Description: Danio rerio dre-miR-196c-3p mature miRNA
• Sequence: 60 - CGACAACAAGAAACUGCCUUGA - 81
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195