Stem-loop dre-mir-738

Accession

MI0004784

Description

Danio rerio dre-mir-738 precursor miRNA

Literature search

2 open access papers mention dre-mir-738
(2 sentences)

Sequence

189476 reads, 1099.0 reads per million, 286 experiments

GCUACGGCCCGCGUCGGGACCUCucgucuagcgacuucuccccucgggggaggggguaggucgcggggcgaguguccucCCCGGCGCGGUGCCUCGGC
(((..(((((((((((((((..(((((((.(((((((.(((((((....))))))).))))))).))))))).))....)))))))))).)))..)))

Structure

   AC   -          ----  CU       a       c       g 
GCU  GGC CCGCGUCGGG    AC  Cucgucu gcgacuu uccccuc g
|||  ||| ||||||||||    ||  ||||||| ||||||| |||||||  
CGG  CCG GGCGCGGCCC    ug  gagcggg cgcugga gggggag g
   CU   U          cucc  -u       g       u       g 

Annotation confidence Medium

Genome context

chr4: 68564061-68564158 [-]

Mature dre-miR-738-5p

• Accession: MIMAT0003769
• Description: Danio rerio dre-miR-738-5p mature miRNA
• Sequence: 1 - GCUACGGCCCGCGUCGGGACCUC - 23
• Evidence: experimental ; cloned [1], Northern [1]

Mature dre-miR-738-3p

• Accession: MIMAT0052797
• Description: Danio rerio dre-miR-738-3p mature miRNA
• Sequence: 80 - CCCGGCGCGGUGCCUCGGC - 98
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16698962
   Cloning and expression of new microRNAs from zebrafish
   "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
   "Nucleic Acids Res (2006) 34:2558-2569