Stem-loop dre-mir-140

Accession

MI0002003

Description

Danio rerio dre-mir-140 precursor miRNA mir-140

Gene
family

RF00678; mir-140

Literature search

11 open access papers mention dre-mir-140
(60 sentences)

Sequence

3822 reads, 316 reads per million, 11 experiments

guguuugucuccugugucccguCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGGACgggaugucuggaggugucugc
.......(((((.((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))).))))))))).).))))).......

Structure

guguuug     u -         A             A       u  c  c 
       ucucc g ugucccguC GUGGUUUUACCCU UGGUAGg ua gu  
       ||||| | ||||||||| ||||||||||||| ||||||| || || a
       ggagg c guagggCAG CACCAAGAUGGGA ACCAUcu gu cg  
cgucugu     u u         G             C       u  -  u 

Annotation confidence High

Genome context

chr25: 34791362-34791466 [+]

Mature dre-miR-140-5p

• Accession: MIMAT0001836
• Description: Danio rerio dre-miR-140-5p mature miRNA
• Sequence: 23 - CAGUGGUUUUACCCUAUGGUAG - 44
• Evidence: experimental ; cloned [1]

Mature dre-miR-140-3p

• Accession: MIMAT0003159
• Description: Danio rerio dre-miR-140-3p mature miRNA
• Sequence: 62 - UACCACAGGGUAGAACCACGGAC - 84
• Evidence: experimental ; array [2], in-situ [2]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311