Stem-loop dre-mir-196a-2

Accession

MI0002035

Description

Danio rerio dre-mir-196a-2 precursor miRNA

Gene family

MIPF0000031; mir-196

Literature search

9 open access papers mention dre-mir-196a-2
(94 sentences)

Sequence

7252 reads, 409 reads per million, 11 experiments

ucgagugguuUAGGUAGUUUCAUGUUGUUGGGauuacauucaaacuCUGCAACGUGAAACUGUCUUAAuugcccca
....((((((.(((((((((((((((((.(((.((......)).))).))))))))))))))))).))))))....

Structure

ucga      U                 U   a  ac 
    gugguu AGGUAGUUUCAUGUUGU GGG uu  a
    |||||| ||||||||||||||||| ||| ||   
    cguuAA UCUGUCAAAGUGCAACG Cuc aa  u
accc      U                 U   a  cu 

Annotation confidence High

Genome context

chr19: 19747619-19747694 [+]

Mature dre-miR-196a-5p

• Accession: MIMAT0001276
• Description: Danio rerio dre-miR-196a-5p mature miRNA
• Sequence: 11 - UAGGUAGUUUCAUGUUGUUGGG - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-196a-3p

• Accession: MIMAT0031983
• Description: Danio rerio dre-miR-196a-3p mature miRNA
• Sequence: 47 - CUGCAACGUGAAACUGUCUUAA - 68
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293