Stem-loop dre-mir-101a

Accession

MI0001960

Description

Danio rerio dre-mir-101a precursor miRNA mir-101

Gene
family

RF00253; mir-101

Literature search

14 open access papers mention dre-mir-101a
(18 sentences)

Sequence

3693131 reads, 5408.0 reads per million, 280 experiments

ggcugcccugguUCAGUUAUCACAGUGCUGAUGcuguccaucuuaaaggUACAGUACUGUGAUAACUGAAGgauggcugcc
(((.(((....(((((((((((((((((((.((((............)))))))))))))))))))))))....))).)))

Structure

   u   cugg                   A    gucca 
ggc gcc    uUCAGUUAUCACAGUGCUG UGcu     u
||| |||    ||||||||||||||||||| ||||      
ccg cgg    AAGUCAAUAGUGUCAUGAC AUgg     c
   u   uagG                   -    aaauu 

Annotation confidence High

Genome context

chr6: 31365446-31365526 [+]

Mature dre-miR-101a-5p

• Accession: MIMAT0060884
• Description: Danio rerio dre-miR-101a-5p mature miRNA
• Sequence: 13 - UCAGUUAUCACAGUGCUGAUG - 33
• Evidence: experimental ; cloned [1]

Mature dre-miR-101a-3p

• Accession: MIMAT0001814
• Description: Danio rerio dre-miR-101a-3p mature miRNA
• Sequence: 50 - UACAGUACUGUGAUAACUGAAG - 71
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293