Search results

mir-101 family in Rfam (RF00253)

Summary
Expression of miR-101 has been validated in both human (MIR:MI0000103, MIR:MI0000739) [1] and mouse (MIR:MI0000148) [2].This mirna appears to be specific to the vertebrates and has now been predicted or confirmed in a wide range of vertebrate species (MIPF:MIPF0000046). The hairpin precursors (represented here) are predicted based on base pairing and cross-species conservation -- their extents are not known. In this case the mature sequence is excised from the 3' arm of the hairpin. This family also contains a predicted homologue of mir-101 from Tetraodon fluviatilis. Imported from miRBase.
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5'

There are 59 hairpins in the mir-101 family

Name Accession RPM Chromosome Start End Strand Confidence
hsa-mir-101-1 MI0000103 3806 chr1 65058434 65058508 - High
mmu-mir-101a MI0000148 2654 chr4 101346945 101347027 - High
rno-mir-101b MI0000648 1821 chr1 247263723 247263819 + High
mmu-mir-101b MI0000649 2519 chr19 29135279 29135375 + High
hsa-mir-101-2 MI0000739 3835 chr9 4850297 4850375 + High
rno-mir-101a MI0000886 2456 chr5 120168437 120168511 - High
dre-mir-101a MI0001960 709 chr6 31365446 31365526 + High
dre-mir-101b MI0001961 51 chr5 1837149 1837260 - High
ggo-mir-101 MI0002717 - chr1 65882421 65882495 - -
sla-mir-101 MI0002718 - None None -
age-mir-101 MI0002719 - None None -
ppa-mir-101 MI0002720 - chr1 66194650 66194724 - -
ptr-mir-101-1 MI0002722 - chr1 64978366 64978440 - -
mml-mir-101-1 MI0002723 14847 chr1 64744969 64745043 - High
lla-mir-101 MI0002724 - None None -
mne-mir-101 MI0002725 - None None -
fru-mir-101a MI0003217 - HE602554.1 11360852 11360925 + -
tni-mir-101a MI0003218 - 1 20355612 20355685 + -
fru-mir-101b MI0003371 - HE591855.1 142282 142369 - -
tni-mir-101b MI0003372 - 4 1028846 1028933 + -
bta-mir-101-2 MI0004735 1087 chr8 40067392 40067470 - -
xtr-mir-101a-2 MI0004903 - chr4 79102552 79102634 - -
xtr-mir-101a-1 MI0004928 - chr1 115031336 115031426 - -
mdo-mir-101-2 MI0005282 12997 chr6 166669166 166669244 + -
mdo-mir-101-1 MI0005283 12529 chr2 26267862 26267944 + High
oan-mir-101-1 MI0006790 11019 Contig3105 5089 5169 - High
oan-mir-101-2 MI0006955 11361 Contig154298 207 285 - -
mml-mir-101-2 MI0007610 15448 chr15 79649338 79649416 - -
cfa-mir-101-2 MI0007995 - chr1 93194328 93194382 + -
cfa-mir-101-1 MI0008107 - chr5 45184774 45184828 + -
ptr-mir-101-2 MI0008408 - chr9 4889298 4889375 + -
bta-mir-101-1 MI0009721 1082 chr3 80980185 80980267 + High
ssc-mir-101-1 MI0010678 2388 chr1 242988419 242988509 - -
ssc-mir-101-2 MI0010679 2342 chr6 135736115 135736195 + -
eca-mir-101-1 MI0012703 843 chr5 95527930 95527988 + High
eca-mir-101-2 MI0012861 1079 chr23 26335600 26335671 + -
tgu-mir-101-1 MI0013701 - chrZ 64083558 64083629 - -
tgu-mir-101-2 MI0013702 - chr8 26300517 26300588 - -
ppy-mir-101-1 MI0014811 - chr1 164325359 164325433 + -
ppy-mir-101-2 MI0014812 - chr9 58132836 58132914 - -
aca-mir-101-1 MI0018712 - chr4 98411443 98411521 + -
aca-mir-101-2 MI0018713 - chr2 52137646 52137738 + -
ola-mir-101a MI0019424 - 4 16768335 16768442 + -
ola-mir-101b MI0019486 - 12 15502016 15502123 + -
sha-mir-101 MI0019638 - GL856736.1 1265417 1265566 + -
cgr-mir-101b MI0020377 4822 JH000649.1 945587 945663 + Low
ccr-mir-101a MI0023304 - None None -
ccr-mir-101b MI0023305 - None None -
ipu-mir-101a MI0024458 - None None -
ipu-mir-101b MI0024459 - None None -
ssa-mir-101a-1 MI0026433 - None None -
ssa-mir-101a-2 MI0026434 - None None -
ssa-mir-101b-1 MI0026435 - None None -
ssa-mir-101b-2 MI0026436 - None None -
efu-mir-101 MI0028598 - JH977620.1 15004278 15004360 - -
chi-mir-101 MI0030589 - chr3 81377563 81377645 + -
tch-mir-101 MI0031164 - KB320637.1 4608206 4608261 - -
oha-mir-101a MI0031314 - AZIM01000560.1 292653 292734 + -
oha-mir-101b MI0031315 - AZIM01000420.1 86263 86359 - -



Comments or questions? Email mirbase@manchester.ac.uk