Stem-loop ssc-mir-101-1

Accession

MI0010678

Description

Sus scrofa ssc-mir-101-1 precursor miRNA

Literature search

12 open access papers mention ssc-mir-101-1
(26 sentences)

Sequence

7295121 reads, 6394.0 reads per million, 213 experiments

gacugaacuguccuuuuUCGGUUAUCAUGGUACCGAUGCUguauaucugaaaggUACAGUACUGUGAUAACUGAAgaaugguggugccauc
(((......)))..(((((((((((((((((((.(.((((............))))).)))))))))))))))))))(((((...))))).

Structure

gacugaacuguccu                   C A    guaua 
              uuuUCGGUUAUCAUGGUAC G UGCU     u
              ||||||||||||||||||| | ||||      
              agAAGUCAAUAGUGUCAUG C AUgg     c
cuaccgugguggua                   A -    aaagu 

Annotation confidence High

Genome context

chr1: 242988419-242988509 [-]

Mature ssc-miR-101-5p

• Accession: MIMAT0010185
• Description: Sus scrofa ssc-miR-101-5p mature miRNA
• Sequence: 55 - UACAGUACUGUGAUAACUGAA - 75
• Evidence: experimental ; 454 [1], Illumina [2,4-5], cloned [3]

Mature ssc-miR-101-1-5p

• Accession: MIMAT0052596
• Description: Sus scrofa ssc-miR-101-1-5p mature miRNA
• Sequence: 18 - UCGGUUAUCAUGGUACCGAUGCU - 40
• Evidence: experimental ; 454 [1], Illumina [2,4-5], cloned [3]

References

1. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


4. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


5. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100