Stem-loop ola-mir-101a

Accession

MI0019424

Description

Oryzias latipes ola-mir-101a precursor miRNA

Literature search

1 open access papers mention ola-mir-101a
(2 sentences)

Sequence

6831 reads, 450.0 reads per million, 43 experiments

ugcuagauuugacaggcugcccugguUCAGUUAUCACAGUGCUGAUGCUguccccauagaaggUACAGUACUGUGAUAACUGAAGgauggcugccaacuugacacaua
..............(((.(((....(((((((((((((((((((.((((.((......)).)))))))))))))))))))))))....))).))).............

Structure

ugcuagauuugaca   u   cugg                   A    g  cc 
              ggc gcc    uUCAGUUAUCACAGUGCUG UGCU uc  c
              ||| |||    ||||||||||||||||||| |||| ||   
              ccg cgg    AAGUCAAUAGUGUCAUGAC AUgg ag  a
-auacacaguucaa   u   uagG                   -    a  au 

Annotation confidence High

Genome context

4: 16768335-16768442 [+]

Mature ola-miR-101a-5p

• Accession: MIMAT0022542
• Description: Oryzias latipes ola-miR-101a-5p mature miRNA
• Sequence: 27 - UCAGUUAUCACAGUGCUGAUGCU - 49
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-101a-3p

• Accession: MIMAT0022543
• Description: Oryzias latipes ola-miR-101a-3p mature miRNA
• Sequence: 64 - UACAGUACUGUGAUAACUGAAG - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8