Stem-loop ola-mir-101b

Accession

MI0019486

Description

Oryzias latipes ola-mir-101b precursor miRNA

Literature search

1 open access papers mention ola-mir-101b
(2 sentences)

Sequence

gggcaguggacuaugaacuguccauuuUCAGUUAUCAUGGUACCGGUGCUgugugccuaucaaGUACAGUACUAUGAUAACUgaagauuggcagugccaucgcuguac
..((((((....(((.((((((.((((((((((((((((((((..(((((............))))).)))))))))))))))))))).))))))..)))))))))..

Structure

gg      gacu   -a      c                    CG     gugug 
  gcagug    aug  acuguc auuuUCAGUUAUCAUGGUAC  GUGCU     c
  ||||||    |||  |||||| ||||||||||||||||||||  |||||      
  ugucgc    uac  ugacgg uagaagUCAAUAGUAUCAUG  CAUGa     c
ca      ----   cg      u                    -A     acuau 

Annotation confidence Not enough data

Genome context

12: 15502016-15502123 [+]

Mature ola-miR-101b-5p

• Accession: MIMAT0022605
• Description: Oryzias latipes ola-miR-101b-5p mature miRNA
• Sequence: 28 - UCAGUUAUCAUGGUACCGGUGCU - 50
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-101b-3p

• Accession: MIMAT0022606
• Description: Oryzias latipes ola-miR-101b-3p mature miRNA
• Sequence: 64 - GUACAGUACUAUGAUAACU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8