Stem-loop dre-mir-430b-4

Accession

MI0002144

Description

Danio rerio dre-mir-430b-4 precursor miRNA miR-430

Gene
family

RF01413; miR-430

Literature search

40 open access papers mention dre-mir-430b-4
(212 sentences)

Sequence

11360584 reads, 222945 reads per million, 9 experiments

caguugacauCAACUCUAACUUUAGCAUCUUUCuuuuaagcagagcagAAAGUGCUAUCAAGUUGGGGUAGauguuugcug
((((.((((((.(((((((((((((((.(((((((((.....))).)))))))))))..)))))))))).)))))).))))

Structure

    u      A          --     U      -   a 
cagu gacauC ACUCUAACUU  UAGCA CUUUCu uuu a
|||| |||||| ||||||||||  ||||| |||||| ||| g
gucg uuguaG UGGGGUUGAA  AUCGU GAAAga gag c
    u      A          CU     -      c   a 

Annotation confidence Medium

Genome context

chr4: 28693628-28693708 [+]

Clustered miRNAs

37 other miRNAs are < 10 kb from dre-mir-430b-4

Mature dre-miR-430b-3p

• Accession: MIMAT0001424
• Description: Danio rerio dre-miR-430b-3p mature miRNA
• Sequence: 49 - AAAGUGCUAUCAAGUUGGGGUAG - 71
• Evidence: experimental ; cloned [1-2]

Mature dre-miR-430b-5p

• Accession: MIMAT0031928
• Description: Danio rerio dre-miR-430b-5p mature miRNA
• Sequence: 11 - CAACUCUAACUUUAGCAUCUUUC - 33
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15774722
   MicroRNAs regulate brain morphogenesis in zebrafish
   "Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF"
   "Science (2005) 308:833-838