Stem-loop dre-mir-365-2

Accession

MI0002069

Description

Danio rerio dre-mir-365-2 precursor miRNA

Literature search

2 open access papers mention dre-mir-365-2
(3 sentences)

Sequence

89008 reads, 189.0 reads per million, 273 experiments

aggcagcaagaaaaaugAGGGACUUUUAGGGGCAGCUGUGuuuuauuaacccagucaUAAUGCCCCUAAAAAUCCUUAuugcucuugcaauuuucagc
.....((((((..((((((((..(((((((((((((((.(((.....))).)))).....))))))))))).))))))))..))))))..........

Structure

-----aggca      aa        AC           -----    U   u 
          gcaaga  aaugAGGG  UUUUAGGGGCA     GCUG Guu u
          ||||||  ||||||||  |||||||||||     |||| ||| a
          cguucu  uuAUUCCU  AAAAUCCCCGU     ugac caa u
cgacuuuuaa      cg        -A           AAUac    c   u 

Annotation confidence High

Genome context

chr3: 35960989-35961086 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-365-2

Mature dre-miR-365-5p

• Accession: MIMAT0060899
• Description: Danio rerio dre-miR-365-5p mature miRNA
• Sequence: 18 - AGGGACUUUUAGGGGCAGCUGUG - 40
• Evidence: experimental ; unknown

Mature dre-miR-365-1-3p

• Accession: MIMAT0001875
• Description: Danio rerio dre-miR-365-1-3p mature miRNA
• Sequence: 58 - UAAUGCCCCUAAAAAUCCUUA - 78
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293