Stem-loop dre-mir-129-2

Accession

MI0001982

Description

Danio rerio dre-mir-129-2 precursor miRNA

Gene family

MIPF0000073; mir-129

Literature search

4 open access papers mention dre-mir-129-2
(16 sentences)

Sequence

388 reads, 28 reads per million, 8 experiments

gucuuucacgaauCUUUUUGCGGUCUGGGCUUGCUguucucaacuaucaaugggAAGCCCUUACCCCAAAAAGCAUuugcggagggc
(((((((.((((((((((((.(((..((((((.(((((..........))))).))))))..))).))))))).))))).)))))))

Structure

       a     -       C   CU      G     cuca 
gucuuuc cgaau CUUUUUG GGU  GGGCUU CUguu    a
||||||| ||||| ||||||| |||  |||||| |||||     
cgggagg guuUA GAAAAAC CCA  CCCGAA gguaa    c
       c     C       C   UU      g     cuau 

Annotation confidence High

Genome context

chr7: 50287933-50288019 [-]

Mature dre-miR-129-3p

• Accession: MIMAT0003158
• Description: Danio rerio dre-miR-129-3p mature miRNA
• Sequence: 55 - AAGCCCUUACCCCAAAAAGCAU - 76
• Evidence: experimental ; array [2]

Mature dre-miR-129-5p

• Accession: MIMAT0001825
• Description: Danio rerio dre-miR-129-5p mature miRNA
• Sequence: 14 - CUUUUUGCGGUCUGGGCUUGCU - 35
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311