miRBase entry: dre-mir-210

Stem-loop dre-mir-210


Accession
MI0001379
Description
Danio rerio dre-mir-210 precursor miRNA

Literature search
5 open access papers mention dre-mir-210
(14 sentences)

Sequence

3001 reads, 142 reads per million, 11 experiments
gcagguaAGCCACUGACUAACGCACAUUGcgccuauucuccacuccaCUGUGCGUGUGACAGCGGCUAAccag
...(((.((((.(((.(..(((((((.((................)).)))))))..).))).)))).)))..

Structure
gca   a    A   A UA       U  cgccuau 
   ggu AGCC CUG C  ACGCACA UG       u
   ||| |||| ||| |  ||||||| ||        
   ccA UCGG GAC G  UGCGUGU ac       c
-ga   A    C   A UG       C  cucaccu 


Annotation confidence High
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Comments
Lim et al. cloned this miRNA from D. rerio [1]. The 3' end of the mature sequence was not determined, but was later analysed in a study of many clones in mouse [2]. The most common cloned length is shown here.

Genome context
chr25: 25506483-25506555 [-]

Database links

Mature dre-miR-210-5p

Accession MIMAT0003392
Description Danio rerio dre-miR-210-5p mature miRNA
Sequence 8 - AGCCACUGACUAACGCACAUUG - 29
Evidence experimental
cloned [3]
Database links

Mature dre-miR-210-3p

Accession MIMAT0001281
Description Danio rerio dre-miR-210-3p mature miRNA
Sequence 48 - CUGUGCGUGUGACAGCGGCUAA - 69
Evidence experimental
cloned [1,3]
Database links
Predicted targets

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 15538371
    A pancreatic islet-specific microRNA regulates insulin secretion
    "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
    "Nature (2004) 432:226-230

  3. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293