Stem-loop dre-mir-2184-1

Accession

MI0010834

Description

Danio rerio dre-mir-2184-1 precursor miRNA

Literature search

2 open access papers mention dre-mir-2184-1
(9 sentences)

Sequence

934038 reads, 1049.0 reads per million, 258 experiments

cugaaugaugcccuaagcccuaAACAGUAAGAGUUUAUGUGCUgagguuaaaaauucAGCACAUUGUCUCUUACUUGUagggaaaaggguuucuaucggccugucacauu
((((..((.(((((...(((((...((((((((...((((((((((........))))))))))...))))))))..)))))...))))).))..))))...........

Structure

-----------    au  u     aag     AAC        UUU          guu 
           cuga  ga gcccu   cccua   AGUAAGAG   AUGUGCUgag   a
           ||||  || |||||   |||||   ||||||||   ||||||||||    
           ggcu  cu uggga   gggaU   UCAUUCUC   UACACGAcuu   a
uuacacugucc    au  u     aaa     -GU        UGU          aaa 

Annotation confidence High

Genome context

chr10: 35654245-35654354 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-2184-1

Mature dre-miR-2184-5p

• Accession: MIMAT0011288
• Description: Danio rerio dre-miR-2184-5p mature miRNA
• Sequence: 23 - AACAGUAAGAGUUUAUGUGCU - 43
• Evidence: experimental ; 454 [1]

Mature dre-miR-2184-3p

• Accession: MIMAT0060906
• Description: Danio rerio dre-miR-2184-3p mature miRNA
• Sequence: 58 - AGCACAUUGUCUCUUACUUGU - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195