Stem-loop dre-mir-196d

Accession

MI0010853

Description

Danio rerio dre-mir-196d precursor miRNA

Literature search

9 open access papers mention dre-mir-196d
(26 sentences)

Sequence

64573 reads, 95.0 reads per million, 195 experiments

agugauuUAGGUAGUUUUAUGUUGUUGGGcucuauuuuauauccCCGCAACACGAAACUGUCUUAauugccu
.((((((.((((((((((.((((((.(((.............))).)))))).)))))))))).))))))..

Structure

-a      U          A      U   cucua 
  gugauu AGGUAGUUUU UGUUGU GGG     u
  |||||| |||||||||| |||||| |||     u
  cguuaA UCUGUCAAAG ACAACG Ccc     u
uc      U          C      C   uauau 

Annotation confidence High

Genome context

chr16: 20913413-20913484 [+]

Mature dre-miR-196d-5p

• Accession: MIMAT0011313
• Description: Danio rerio dre-miR-196d-5p mature miRNA
• Sequence: 8 - UAGGUAGUUUUAUGUUGUUGGG - 29
• Evidence: experimental ; 454 [1]

Mature dre-miR-196d-3p

• Accession: MIMAT0060908
• Description: Danio rerio dre-miR-196d-3p mature miRNA
• Sequence: 45 - CCGCAACACGAAACUGUCUUA - 65
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195