Stem-loop dre-mir-365-1

Accession

MI0002068

Description

Danio rerio dre-mir-365-1 precursor miRNA

Literature search

2 open access papers mention dre-mir-365-1
(3 sentences)

Sequence

86674 reads, 180.0 reads per million, 270 experiments

ccgcagggagaaugAGGGGCUUUUGGGGGCACUUGUGuuucaguuucaccaucaUAAUGCCCCUAAAAAUCCUUAuugcucuugcacug
..((((((..((((((((..(((((((((((.(((((...............)))))))))))))))).))))))))..))))))....

Structure

--cc      ag        GC           C     uuucag 
    gcaggg  aaugAGGG  UUUUGGGGGCA UUGUG      u
    ||||||  ||||||||  ||||||||||| |||||      u
    cguucu  uuAUUCCU  AAAAUCCCCGU AAUac      u
guca      cg        -A           -     uaccac 

Annotation confidence High

Genome context

chr3: 43716827-43716915 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-365-1

Mature dre-miR-365-1-5p

• Accession: MIMAT0052779
• Description: Danio rerio dre-miR-365-1-5p mature miRNA
• Sequence: 15 - AGGGGCUUUUGGGGGCACUUGUG - 37
• Evidence: not_experimental

Mature dre-miR-365-1-3p

• Accession: MIMAT0001875
• Description: Danio rerio dre-miR-365-1-3p mature miRNA
• Sequence: 55 - UAAUGCCCCUAAAAAUCCUUA - 75
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293