miRBase entry: dre-let-7a-5

Stem-loop dre-let-7a-5

Accession

MI0001862

Description

Danio rerio dre-let-7a-5 precursor miRNA

Literature search

43 open access papers mention dre-let-7a-5
(334 sentences)

Sequence

196509 reads, 13869 reads per million, 11 experiments

guacguguuuuuggugucuggacaaggUGAGGUAGUAGGUUGUAUAGUUuggugggagggaucaaacccuguucagcugauaacuauacagucuauugccuuccuugugucaccuaaggucugc
............((((...(.((((((.(((((((((((((((((((((.(.((((((((......)))).)))).)....))))))))))))))))))))))))))).)))))..........

Structure

guacguguuuuu    ucu g      U                     ---u g    -    au 
            ggug   g acaagg GAGGUAGUAGGUUGUAUAGUU    g uggg aggg  c
            ||||   | |||||| |||||||||||||||||||||    | |||| ||||   
            ccac   u uguucc uuccguuaucugacauaucaa    c acuu uccc  a
--cgucuggaau    --- g      -                     uagu g    g    aa

Annotation confidence High

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Genome context

chr23: 5431196-5431319 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-let-7a-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-let-7a

Accession	MIMAT0001759
Description	Danio rerio dre-let-7a mature miRNA
Sequence	28 - UGAGGUAGUAGGUUGUAUAGUU - 49
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293