Stem-loop dre-mir-21-2

Accession

MI0001909

Description

Danio rerio dre-mir-21-2 precursor miRNA mir-21

Gene
family

RF00658; mir-21

Literature search

22 open access papers mention dre-mir-21-2
(168 sentences)

Sequence

75916685 reads, 58633.0 reads per million, 306 experiments

agacagacaguaaaagugucccuuucugucauguAGCUUAUCAGACUGGUGUUGGcuuugaguuuuuggCAACAGCAGUCUAAUAGGCUGUcugacauuuugggcuuauucgacguacgguuuguuu
.(((((((.(((..((((.(((....(((((..((((((((.((((((.(((((.(...........).))))).)))))).))))))))..)))))....)))..)))).....))).))))))).

Structure

a       a   ---aa    -u   uuuc     ug        C      G     G uuug 
 gacagac gua     agug  ccc    uguca  uAGCUUAU AGACUG UGUUG c    a
 ||||||| |||     ||||  |||    |||||  |||||||| |||||| ||||| |    g
 uuguuug cau     uuau  ggg    acagu  GUCGGAUA UCUGAC ACAAC g    u
u       g   gcagc    uc   uuuu     cU        A      G     g uuuu 

Annotation confidence High

Genome context

chr15: 17373789-17373915 [+]

Mature dre-miR-21-2-5p

• Accession: MIMAT0001787
• Description: Danio rerio dre-miR-21-2-5p mature miRNA
• Sequence: 35 - AGCUUAUCAGACUGGUGUUGG - 55
• Evidence: experimental ; cloned [1]

Mature dre-miR-21-2-3p

• Accession: MIMAT0052756
• Description: Danio rerio dre-miR-21-2-3p mature miRNA
• Sequence: 70 - CAACAGCAGUCUAAUAGGCUGU - 91
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293