Stem-loop dre-let-7e

Accession

MI0001871

Description

Danio rerio dre-let-7e precursor miRNA

Literature search

42 open access papers mention dre-let-7e
(209 sentences)

Sequence

30531 reads, 2136 reads per million, 11 experiments

gcuguucuuggggcUGAGGUAGUAGAUUGAAUAGUUguggagcccugcgcucucucucugagauaacuauacaaucuacugucuuuccuaaggcgacagc
(((((((((((((..((((((((((((((.(((((((((((((.....)))))(((...))))))))))).)))))))))))))))))))))..))))))

Structure

      --       cU              A        ---------     c 
gcuguu  cuugggg  GAGGUAGUAGAUUG AUAGUUgu         ggagc c
||||||  |||||||  |||||||||||||| ||||||||         ||||| u
cgacag  gaauccu  uucugucaucuaac uaucaaua         ucucg g
      cg       --              a        gagucucuc     c 

Annotation confidence Not enough data

Genome context

chr23: 5431418-5431517 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-let-7e

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293