Stem-loop dre-mir-25

Accession

MI0001922

Description

Danio rerio dre-mir-25 precursor miRNA

Literature search

44 open access papers mention dre-mir-25
(88 sentences)

Sequence

3348137 reads, 4342.0 reads per million, 298 experiments

gccggcgcugagAGGCGGAGACUUGGGCAGCUGCCgucauucccagaaggCAUUGCACUUGUCUCGGUCUGACaguggcggc
((((.(((((..((((.(((((..(.((((.((((.((.......)).)))))))).)..))))).))))..))))).))))

Structure

    g     ag    G     UU G    C    g  au 
gccg cgcug  AGGC GAGAC  G GCAG UGCC uc  u
|||| |||||  |||| |||||  | |||| |||| ||  c
cggc gugaC  UCUG CUCUG  C CGUU ACgg ag  c
    g     AG    G     UU A    -    a  ac 

Annotation confidence High

Genome context

chr14: 100767-100848 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-25

Mature dre-miR-25-5p

• Accession: MIMAT0031946
• Description: Danio rerio dre-miR-25-5p mature miRNA
• Sequence: 13 - AGGCGGAGACUUGGGCAGCUGCC - 35
• Evidence: not_experimental

Mature dre-miR-25-3p

• Accession: MIMAT0001793
• Description: Danio rerio dre-miR-25-3p mature miRNA
• Sequence: 51 - CAUUGCACUUGUCUCGGUCUGAC - 73
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293