miRBase entry: efu-mir-200b

Stem-loop efu-mir-200b

Accession

MI0028697

Description

Eptesicus fuscus efu-mir-200b precursor miRNA

Sequence

gcggccaucgccaucuuacugggcagcauuggaugugucaggucucUAAUACUGCCUGGUAAUGAUGACGgcggggcccu
..((((.(((((((((((((((((((.((((((.(........))))))).))))))))))).)))...)))))))))..

Structure

gc    a     ---   -           c      u ugu 
  ggcc ucgcc   auc uuacugggcag auugga g   c
  |||| |||||   ||| ||||||||||| |||||| |    
  ccgg ggcgG   UAG AAUGGUCCGUC UAAUcu c   a
uc    -     CAG   U           A      - ugg

Annotation confidence Not enough data

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Genome context

JH977681.1: 208041-208120 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from efu-mir-200b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature efu-miR-200b

Accession	MIMAT0035012
Description	Eptesicus fuscus efu-miR-200b mature miRNA
Sequence	47 - UAAUACUGCCUGGUAAUGAUGACG - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545