Stem-loop efu-mir-200b

Accession

MI0028697

Description

Eptesicus fuscus efu-mir-200b precursor miRNA

Sequence

210048 reads, 2004.0 reads per million, 8 experiments

gcggccaucgcCAUCUUACUGGGCAGCAUUGGAUGugucaggucucUAAUACUGCCUGGUAAUGAUGACGgcggggcccu
..((((.(((((((((((((((((((.((((((.(........))))))).))))))))))).)))...)))))))))..

Structure

gc    a     ---   -           C      U ugu 
  ggcc ucgcC   AUC UUACUGGGCAG AUUGGA G   c
  |||| |||||   ||| ||||||||||| |||||| |    
  ccgg ggcgG   UAG AAUGGUCCGUC UAAUcu c   a
uc    -     CAG   U           A      - ugg 

Annotation confidence High

Genome context

JH977681.1: 208041-208120 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from efu-mir-200b

Mature efu-miR-200b-5p

• Accession: MIMAT0058807
• Description: Eptesicus fuscus efu-miR-200b-5p mature miRNA
• Sequence: 12 - CAUCUUACUGGGCAGCAUUGGAUG - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-200b-3p

• Accession: MIMAT0035012
• Description: Eptesicus fuscus efu-miR-200b-3p mature miRNA
• Sequence: 47 - UAAUACUGCCUGGUAAUGAUGACG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545