Stem-loop tgu-mir-200a

Accession

MI0013759

Description

Taeniopygia guttata tgu-mir-200a precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

ggacuugcugguccucugugggCAUCUUACUAGACAGUGCUGGauuugcugccucuacucUAACACUGUCUGGUAACGAUGUUuaaaggguga
(((((....)))))(((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))....

Structure

ggacuugcuggucc   g        -             C    uuugcu 
              ucu ugggCAUC UUACUAGACAGUG UGGa      g
              ||| |||||||| ||||||||||||| ||||       
              gga auUUGUAG AAUGGUCUGUCAC AUcu      c
----------agug   a        C             A    caucuc 

Annotation confidence Not enough data

Genome context

chr21: 5894308-5894400 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-200a

Mature tgu-miR-200a-5p

• Accession: MIMAT0014640
• Description: Taeniopygia guttata tgu-miR-200a-5p mature miRNA
• Sequence: 23 - CAUCUUACUAGACAGUGCUGG - 43
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-200a-3p

• Accession: MIMAT0014545
• Description: Taeniopygia guttata tgu-miR-200a-3p mature miRNA
• Sequence: 61 - UAACACUGUCUGGUAACGAUGUU - 83
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727