Stem-loop mml-mir-200a

Accession

MI0007663

Description

Macaca mulatta mml-mir-200a precursor miRNA mir-8

Gene
family

RF00241; mir-8

Literature search

2 open access papers mention mml-mir-200a
(2 sentences)

Sequence

57084 reads, 462 reads per million, 8 experiments

ccgggccccugugagCAUCUUACCGGACAGUGCUGGAuuucccagcuugacucUAACACUGUCUGGUAACGAUGUucaaaggugacccac
..((((.(((.(((((((((((((((((((((((((.....)))))...........)))))))))))).)))))))).))).).)))..

Structure

cc   - c   g        -            -----------     A 
  ggg c ccu ugagCAUC UUACCGGACAGU           GCUGG u
  ||| | ||| |||||||| ||||||||||||           ||||| u
  ccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
ca   a u   a        C            CAAUcucaguu     c 

Annotation confidence High

Genome context

chr1: 259981-260070 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mml-mir-200a

Mature mml-miR-200a-3p

• Accession: MIMAT0006233
• Description: Macaca mulatta mml-miR-200a-3p mature miRNA
• Sequence: 54 - UAACACUGUCUGGUAACGAUGU - 75
• Evidence: experimental ; Illumina [2]

Mature mml-miR-200a-5p

• Accession: MIMAT0026842
• Description: Macaca mulatta mml-miR-200a-5p mature miRNA
• Sequence: 16 - CAUCUUACCGGACAGUGCUGGA - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18186931
   Identification of novel homologous microRNA genes in the rhesus macaque genome
   Yue J, Sheng Y, Orwig KE
   BMC Genomics (2008) 9:8


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45