Stem-loop mml-mir-200a

Accession

MI0007663

Description

Macaca mulatta mml-mir-200a precursor miRNA mir-8

Gene
family

RF00241; mir-8

Literature search

10 open access papers mention mml-mir-200a
(21 sentences)

Sequence

278850 reads, 630.0 reads per million, 140 experiments

ccgggccccugugagCAUCUUACCGGACAGUGCUGGAuuucccagcuugacucUAACACUGUCUGGUAACGAUGUucaaaggugacccac
..((((.(((.(((((((((((((((((((((((((.....)))))...........)))))))))))).)))))))).))).).)))..

Structure

cc   - c   g        -            -----------     A 
  ggg c ccu ugagCAUC UUACCGGACAGU           GCUGG u
  ||| | ||| |||||||| ||||||||||||           ||||| u
  ccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
ca   a u   a        C            CAAUcucaguu     c 

Annotation confidence High

Genome context

1: 223252502-223252591 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mml-mir-200a

Mature mml-miR-200a-5p

• Accession: MIMAT0026842
• Description: Macaca mulatta mml-miR-200a-5p mature miRNA
• Sequence: 16 - CAUCUUACCGGACAGUGCUGGA - 37
• Evidence: experimental ; Illumina [2]

Mature mml-miR-200a-3p

• Accession: MIMAT0006233
• Description: Macaca mulatta mml-miR-200a-3p mature miRNA
• Sequence: 54 - UAACACUGUCUGGUAACGAUGU - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18186931
   Identification of novel homologous microRNA genes in the rhesus macaque genome
   Yue J, Sheng Y, Orwig KE
   BMC Genomics (2008) 9:8


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45