Stem-loop ssc-mir-429

Accession

MI0017991

Description

Sus scrofa ssc-mir-429 precursor miRNA

Literature search

10 open access papers mention ssc-mir-429
(14 sentences)

Sequence

2088258 reads, 759.0 reads per million, 164 experiments

gccgccgauggguGUCUUACCAGGCACGGUUAGAUcugguucuucugucUAAUACUGUCUGGUAAUGCCGUccauucccgg
.(((..((((((((.(((((((((((..(((((((..((....)).)))))))..)))))))))).).))))))))..)))

Structure

g   cc        U -          CG       cu  u 
 ccg  gauggguG C UUACCAGGCA  GUUAGAU  gg u
 |||  |||||||| | ||||||||||  |||||||  ||  
 ggc  uuaccUGC G AAUGGUCUGU  UAAUcug  cu c
-   cc        C U          CA       -u  u 

Annotation confidence High

Genome context

chr6: 58044174-58044254 [-]

Mature ssc-miR-429-5p

• Accession: MIMAT0052672
• Description: Sus scrofa ssc-miR-429-5p mature miRNA
• Sequence: 14 - GUCUUACCAGGCACGGUUAGAU - 35
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-429-3p

• Accession: MIMAT0020591
• Description: Sus scrofa ssc-miR-429-3p mature miRNA
• Sequence: 50 - UAAUACUGUCUGGUAAUGCCGU - 71
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100