Stem-loop cfa-mir-200a

Accession

MI0010362

Description

Canis lupus familiaris cfa-mir-200a precursor miRNA

Literature search

13 open access papers mention cfa-mir-200a
(24 sentences)

Sequence

1052801 reads, 1890.0 reads per million, 78 experiments

cugggccucugugggCAUCUUACCGGACAGUGCUGGAuuucuuggcuugacucUAACACUGUCUGGUAACGAUGUUcaaaggugacccac
.(((((.(((.(((((((((((((((((((((.((((..((.......)).)))).))))))))))))).)))))))).))).).)))).

Structure

c    - c   g        -             C    uu  uu 
 uggg c ucu ugggCAUC UUACCGGACAGUG UGGA  uc  g
 |||| | ||| |||||||| ||||||||||||| ||||  ||  g
 accc g gga acUUGUAG AAUGGUCUGUCAC AUcu  ag  c
c    a u   a        C             A    -c  uu 

Annotation confidence High

Genome context

5: 56571960-56572049 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-200a

Mature cfa-miR-200a-5p

• Accession: MIMAT0009865
• Description: Canis lupus familiaris cfa-miR-200a-5p mature miRNA
• Sequence: 16 - CAUCUUACCGGACAGUGCUGGA - 37
• Evidence: not_experimental

Mature cfa-miR-200a-3p

• Accession: MIMAT0051911
• Description: Canis lupus familiaris cfa-miR-200a-3p mature miRNA
• Sequence: 54 - UAACACUGUCUGGUAACGAUGUU - 76
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39