miRBase entry: efu-mir-200c

Stem-loop efu-mir-200c

Accession

MI0028789

Description

Eptesicus fuscus efu-mir-200c precursor miRNA

Sequence

ugggggcccccgucuuacccagcaguguuugggugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGAggcccccguc
.(((((((.(((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))).)))))))...

Structure

--u       c     -      a        u   u   gg 
   gggggcc ccguc uuaccc gcaguguu ggg gcu  u
   ||||||| ||||| |||||| |||||||| ||| |||  u
   cccccgg GGUAG AAUGGG CGUCAUAA cuc uga  g
cug       A     U      C        U   -   gg

Annotation confidence Not enough data

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Genome context

JH977638.1: 17349898-17349980 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-200c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature efu-miR-200c

Accession	MIMAT0035096
Description	Eptesicus fuscus efu-miR-200c mature miRNA
Sequence	51 - UAAUACUGCCGGGUAAUGAUGGA - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545