Stem-loop rno-mir-200a

Accession

MI0000943

Description

Rattus norvegicus rno-mir-200a precursor miRNA

Literature search

260 open access papers mention rno-mir-200a
(1045 sentences)

Sequence

318353 reads, 477.0 reads per million, 446 experiments

cugggccucugugggCAUCUUACCGGACAGUGCUGGAUuucuuggcuugacucUAACACUGUCUGGUAACGAUGUUcaaaggugaccca
.(((((.(((.(((((((((((((((((((((.((((..((.......)).)))).))))))))))))).)))))))).))).).))))

Structure

c    - c   g        -             C    Uu  uu 
 uggg c ucu ugggCAUC UUACCGGACAGUG UGGA  uc  g
 |||| | ||| |||||||| ||||||||||||| ||||  ||  g
 accc g gga acUUGUAG AAUGGUCUGUCAC AUcu  ag  c
-    a u   a        C             A    -c  uu 

Annotation confidence High

Genome context

chr5: 173489366-173489454 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-200a

Mature rno-miR-200a-5p

• Accession: MIMAT0017151
• Description: Rattus norvegicus rno-miR-200a-5p mature miRNA
• Sequence: 16 - CAUCUUACCGGACAGUGCUGGAU - 38
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-200a-3p

• Accession: MIMAT0000874
• Description: Rattus norvegicus rno-miR-200a-3p mature miRNA
• Sequence: 54 - UAACACUGUCUGGUAACGAUGUU - 76
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249