Stem-loop rno-mir-200c

Accession

MI0000942

Description

Rattus norvegicus rno-mir-200c precursor miRNA

Literature search

257 open access papers mention rno-mir-200c
(1034 sentences)

Sequence

114837 reads, 167.0 reads per million, 434 experiments

cccuCGUCUUACCCAGCAGUGUUUGGgugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGAgg
.(((((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))).))))

Structure

c    -   -      A        U   u   gg 
 ccuC GUC UUACCC GCAGUGUU GGg gcu  u
 |||| ||| |||||| |||||||| ||| |||  u
 ggAG UAG AAUGGG CGUCAUAA cuc uga  g
-    G   U      C        U   -   gg 

Annotation confidence High

Genome context

chr4: 157236786-157236854 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-200c

Mature rno-miR-200c-5p

• Accession: MIMAT0017150
• Description: Rattus norvegicus rno-miR-200c-5p mature miRNA
• Sequence: 5 - CGUCUUACCCAGCAGUGUUUGG - 26
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-200c-3p

• Accession: MIMAT0000873
• Description: Rattus norvegicus rno-miR-200c-3p mature miRNA
• Sequence: 45 - UAAUACUGCCGGGUAAUGAUGGA - 67
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 14573789
   Reduced accumulation of specific microRNAs in colorectal neoplasia
   "Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ"
   "Mol Cancer Res (2003) 1:882-891


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249