Stem-loop cfa-mir-141

Accession

MI0010374

Description

Canis lupus familiaris cfa-mir-141 precursor miRNA

Literature search

6 open access papers mention cfa-mir-141
(13 sentences)

Sequence

88043 reads, 570.0 reads per million, 79 experiments

gccggcucugggucCAUCUUCCAGUACAGUGUUGGAUGGucuagucacgaagcUCCUAACACUGUCUGGUAAAGAUGGcccccggg
.((((....(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..)))))))))))))).

Structure

g    cucu   u       --    U        -   UGG  ua 
 ccgg    ggg cCAUCUU  CCAG ACAGUGUU GGA   uc  g
 ||||    ||| |||||||  |||| |||||||| |||   ||  u
 ggcc    ccc GGUAGAA  GGUC UGUCACAA CCU   ag  c
g    ----   -       AU    -        U   cga  ca 

Annotation confidence High

Genome context

27: 38434268-38434353 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-141

Mature cfa-miR-141-5p

• Accession: MIMAT0051918
• Description: Canis lupus familiaris cfa-miR-141-5p mature miRNA
• Sequence: 15 - CAUCUUCCAGUACAGUGUUGGAUGG - 39
• Evidence: not_experimental

Mature cfa-miR-141-3p

• Accession: MIMAT0009876
• Description: Canis lupus familiaris cfa-miR-141-3p mature miRNA
• Sequence: 54 - UCCUAACACUGUCUGGUAAAGAUGG - 78
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39