Stem-loop bbe-mir-200c

Accession

MI0026197

Description

Branchiostoma belcheri bbe-mir-200c precursor miRNA

Sequence

1815543 reads, 9748.0 reads per million, 16 experiments

uaaccaccuagcggaguuguguCAUCUUACCUGGCAGGUUUAGAcgauucugagaucUAACACUGUCUGGUAAUGAUGAcaggacuccgcaauac
..........((((((((.((((((((((((.(((((..((((((........).)))))..))))).))))).))))))).)))))))).....

Structure

uaaccaccua        g       -     U     GU     - gau 
          gcggaguu uguCAUC UUACC GGCAG  UUAGA c   u
          |||||||| ||||||| ||||| |||||  ||||| |    
          cgccucag acAGUAG AAUGG CUGUC  AAUcu g   c
-----cauaa        g       U     U     AC     a agu 

Annotation confidence High

Genome context

Unknown

Mature bbe-miR-200c-5p

• Accession: MIMAT0058578
• Description: Branchiostoma belcheri bbe-miR-200c-5p mature miRNA
• Sequence: 23 - CAUCUUACCUGGCAGGUUUAGA - 44
• Evidence: not_experimental

Mature bbe-miR-200c-3p

• Accession: MIMAT0031610
• Description: Branchiostoma belcheri bbe-miR-200c-3p mature miRNA
• Sequence: 58 - UAACACUGUCUGGUAAUGAUGA - 79
• Evidence: not_experimental

References

1. PubMed ID: 23335747
   Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
   "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
   "J Immunol (2013) 190:1491-1500