Stem-loop rno-mir-429

Accession

MI0001643

Description

Rattus norvegicus rno-mir-429 precursor miRNA

Literature search

18 open access papers mention rno-mir-429
(43 sentences)

Sequence

562212 reads, 582 reads per million, 456 experiments

ugccugcugauggaugucuuaccagacaugguuagaucuggauguaucugucUAAUACUGUCUGGUAAUGCCGUccauccauggc
.(((....((((((((.(((((((((((..(((((((..(((....))))))))))..)))))))))).).))))))))...)))

Structure

u   ugcu        u -          ug       cu   u 
 gcc    gauggaug c uuaccagaca  guuagau  gga g
 |||    |||||||| | ||||||||||  |||||||  |||  
 cgg    cuaccUGC G AAUGGUCUGU  UAAUcug  ucu u
-   -uac        C U          CA       --   a 

Annotation confidence Not enough data

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR201. The sequence is unrelated to mouse mir-201 (MIR:MI0000244).

Genome context

chr5: 173488331-173488415 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-429

Mature rno-miR-429

• Accession: MIMAT0001538
• Description: Rattus norvegicus rno-miR-429 mature miRNA
• Sequence: 53 - UAAUACUGUCUGGUAAUGCCGU - 74
• Evidence: experimental ; cloned [2], Northern [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345