Stem-loop aca-mir-200b

Accession

MI0018803

Description

Anolis carolinensis aca-mir-200b precursor miRNA

Literature search

1 open access papers mention aca-mir-200b
(1 sentences)

Sequence

22413 reads, 7893.0 reads per million, 2 experiments

aaaccaucuugggaggucauugcCAUCUUACUGGGCAGCAUUGGAUGuuuucugucuuucUAAUACUGCCUGGUAAUGAUGAUUGuggccuucucacgcc
..........((((((((((...(((((((((((((((.((((((.............)))))).))))))))))).))))...))))))))))......

Structure

aaaccaucuu          ugc    -           C      UGuuu 
          gggaggucau   CAUC UUACUGGGCAG AUUGGA     u
          ||||||||||   |||| ||||||||||| ||||||     c
          ucuuccgguG   GUAG AAUGGUCCGUC UAAUcu     u
----ccgcac          UUA    U           A      uucug 

Annotation confidence High

Genome context

GL343647.1: 274634-274733 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-200b

Mature aca-miR-200b-5p

• Accession: MIMAT0021846
• Description: Anolis carolinensis aca-miR-200b-5p mature miRNA
• Sequence: 24 - CAUCUUACUGGGCAGCAUUGGAUG - 47
• Evidence: experimental ; Illumina [1]

Mature aca-miR-200b-3p

• Accession: MIMAT0021847
• Description: Anolis carolinensis aca-miR-200b-3p mature miRNA
• Sequence: 61 - UAAUACUGCCUGGUAAUGAUGAUUG - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107