Stem-loop eca-mir-200c

Accession

MI0012727

Description

Equus caballus eca-mir-200c precursor miRNA

Literature search

16 open access papers mention eca-mir-200c
(47 sentences)

Sequence

1081852 reads, 5047.0 reads per million, 204 experiments

cCGUCUUACCCAGCAGUGUUUGGgugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGA
(((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))).

Structure

-     -      A        U   u   gg 
 cCGUC UUACCC GCAGUGUU GGg gcu  u
 ||||| |||||| |||||||| ||| |||  u
 GGUAG AAUGGG CGUCAUAA cuc uga  g
A     U      C        U   -   gg 

Annotation confidence High

Genome context

6: 35438670-35438733 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-200c

Mature eca-miR-200c-5p

• Accession: MIMAT0051358
• Description: Equus caballus eca-miR-200c-5p mature miRNA
• Sequence: 2 - CGUCUUACCCAGCAGUGUUUGG - 23
• Evidence: not_experimental

Mature eca-miR-200c-3p

• Accession: MIMAT0012974
• Description: Equus caballus eca-miR-200c-3p mature miRNA
• Sequence: 42 - UAAUACUGCCGGGUAAUGAUGGA - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131